SEGasCompartment.h

/* Distributed under the Apache License, Version 2.0.
   See accompanying NOTICE file for details.*/
 
#pragma once
#include "cdm/compartment/fluid/SEFluidCompartment.h"
#include "cdm/compartment/fluid/SEGasCompartmentLink.h"
#include "cdm/compartment/substances/SEGasSubstanceQuantity.h"
#include "cdm/substance/SESubstanceTransport.h"
class SEGasBlackBox;
 
enum class BalanceGasBy { Volume, VolumeFraction };
 
class CDM_DECL SEGasCompartment : public SEFluidCompartment<SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity>
{
  friend class PBCompartment;//friend the serialization class
  friend class SECompartmentManager;
protected:
  SEGasCompartment(const std::string& name, Logger* logger);
public:
  virtual ~SEGasCompartment();
 
  virtual void Clear();
 
  virtual const SEScalar* GetScalar(const std::string& name);
 
  virtual void StateChange();
 
  virtual void Balance(BalanceGasBy e);
 
  virtual bool HasDiffusionSurfaceArea() const;
  virtual SEScalarArea& GetDiffusionSurfaceArea();
  virtual double GetDiffusionSurfaceArea(const AreaUnit& unit) const;
 
  virtual bool HasVentilation() const;
  virtual SEScalarVolumePerTime& GetVentilation();
  virtual double GetVentilation(const VolumePerTimeUnit& unit) const;
 
  virtual bool HasVentilationPerfusionRatio() const;
  virtual SEScalar& GetVentilationPerfusionRatio();
  virtual double GetVentilationPerfusionRatio() const;
 
  virtual void AddChild(SEGasCompartment& child);
  virtual const std::vector<SEGasCompartment*>& GetChildren() { return m_Children; }
  virtual const std::vector<SEGasCompartment*>& GetLeaves() { return m_Leaves; }
 
protected:
  virtual SEGasSubstanceQuantity& CreateSubstanceQuantity(SESubstance& substance, bool zeroOut=true);
 
  SEScalarArea*          m_DiffusionSurfaceArea;
  SEScalarVolumePerTime* m_Ventilation;
  SEScalar*              m_VentilationPerfusionRatio;
 
  std::vector<SEGasCompartment*> m_Children;
  std::vector<SEGasCompartment*> m_Leaves;
};