#include <SEGasCompartmentGraph.h>

Inherits SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >.

Public Member Functions

virtual ~SEGasCompartmentGraph ()
 
void AddGraph (SEGasCompartmentGraph &graph)
 
- Public Member Functions inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
 SECompartmentTransportGraph (const std::string &name, Logger *logger)
 
virtual ~SECompartmentTransportGraph ()
 
virtual void Clear ()
 
virtual std::string GetName () const
 
virtual void StateChange ()
 
- Public Member Functions inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
virtual ~SECompartmentGraph ()
 
virtual void AddCompartment (CompartmentType &cmpt)
 
virtual CompartmentType * GetCompartment (const std::string &name)
 
virtual const CompartmentType * GetCompartment (const std::string &name) const
 
virtual const std::vector< CompartmentType *> & GetCompartments () const
 
virtual void RemoveCompartment (const CompartmentType &cmpt)
 
virtual void RemoveCompartment (const std::string &name)
 
virtual void AddLink (CompartmentLinkType &link)
 
virtual CompartmentLinkType * GetLink (const std::string &name)
 
virtual const CompartmentLinkType * GetLink (const std::string &name) const
 
virtual const std::vector< CompartmentLinkType *> & GetLinks () const
 
virtual void RemoveLink (const CompartmentLinkType &link)
 
virtual void RemoveLink (const std::string &name)
 
- Public Member Functions inherited from Loggable
 Loggable ()
 
 Loggable (Logger *log)
 
virtual ~Loggable ()
 
virtual LoggerGetLogger () const
 
virtual void Debug (std::string const &msg, std::string const &origin=empty) const
 
virtual void Debug (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Debug (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Info (std::string const &msg, std::string const &origin=empty) const
 
virtual void Info (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (const std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::string const &msg, std::string const &origin=empty) const
 
virtual void Warning (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Error (std::string const &msg, std::string const &origin=empty) const
 
virtual void Error (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Error (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::string const &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::ostream &msg, std::string const &origin=empty) const
 

Protected Member Functions

 SEGasCompartmentGraph (const std::string &name, Logger *logger)
 
void BalanceByIntensive ()
 
- Protected Member Functions inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
virtual size_t GetVertexIndex (const GraphVertexType &v) const
 
virtual const std::vector< GraphVertexType *> & GetVerticies () const
 
virtual const std::vector< GraphEdgeType *> * GetSourceEdges (const GraphVertexType &v) const
 
virtual const std::vector< GraphEdgeType *> * GetTargetEdges (const GraphVertexType &v) const
 
- Protected Member Functions inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
 SECompartmentGraph (const std::string &name, Logger *logger)
 

Friends

class PBCompartment
 
class SECompartmentManager
 

Additional Inherited Members

- Static Public Attributes inherited from Loggable
static const std::string empty
 
- Protected Attributes inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
std::vector< GraphVertexType *> m_Verticies
 
std::map< const GraphVertexType *, size_t > m_VertexIndicies
 
std::map< const GraphVertexType *, std::vector< GraphEdgeType *> *> m_SourceEdgeMap
 
std::map< const GraphVertexType *, std::vector< GraphEdgeType *> *> m_TargetEdgeMap
 
- Protected Attributes inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
std::string m_Name
 
std::vector< CompartmentType *> m_Compartments
 
std::vector< CompartmentLinkType *> m_CompartmentLinks
 
- Protected Attributes inherited from Loggable
Loggerm_Logger
 

Constructor & Destructor Documentation

◆ SEGasCompartmentGraph()

SEGasCompartmentGraph::SEGasCompartmentGraph ( const std::string &  name,
Logger logger 
)
inlineprotected

◆ ~SEGasCompartmentGraph()

virtual SEGasCompartmentGraph::~SEGasCompartmentGraph ( )
inlinevirtual

Member Function Documentation

◆ AddGraph()

void SEGasCompartmentGraph::AddGraph ( SEGasCompartmentGraph graph)

◆ BalanceByIntensive()

Friends And Related Function Documentation

◆ PBCompartment

friend class PBCompartment
friend

◆ SECompartmentManager

friend class SECompartmentManager
friend